Re: [Biojava-l] Looking for a RandomAccessFile-like class for sequences

2006-02-09 Thread mark . schreiber
vartis) Subject: [Biojava-l] Looking for a RandomAccessFile-like class for sequences Hello, I am looking for a RandomAccessFile-like class that can read small, arbitrary chunks of a very large (like 250K of human DNA) fasta file. (UCSC chromosomal fasta files contain just 1 sequence for the

[Biojava-l] Looking for a RandomAccessFile-like class for sequences

2006-02-09 Thread Todd Riley
Hello, I am looking for a RandomAccessFile-like class that can read small, arbitrary chunks of a very large (like 250K of human DNA) fasta file. (UCSC chromosomal fasta files contain just 1 sequence for the whole chromosome). I was hoping that someone may have already written a class that w