RE: [Biojava-l] Phred Sequence

2003-03-09 Thread Schreiber, Mark
[EMAIL PROTECTED] > Sent: Saturday, 8 March 2003 8:47 a.m. > To: Schreiber, Mark; biojava > Subject: RE: [Biojava-l] Phred Sequence > > > I was using biojava 1.2. There seems to be a partial fix in > biojava-live. I just updated and rebuilt my biojava-live and > when I use i

RE: [Biojava-l] Phred Sequence

2003-03-07 Thread David Waring
nesday, March 05, 2003 7:45 PM > To: David Waring; biojava > Subject: RE: [Biojava-l] Phred Sequence > > > Hi - > > I was trying to replicate this error to fix it but I can't (has someone > kindly fixed it for me??). The following code seems to work fine > > S

RE: [Biojava-l] Phred Sequence

2003-03-05 Thread Schreiber, Mark
> From: David Waring [mailto:[EMAIL PROTECTED] > Sent: Thursday, 20 February 2003 4:20 p.m. > To: biojava > Subject: [Biojava-l] Phred Sequence > > > I am writing code to parse a .phd file and create a > PhredSequence. It is failing with an IllegalSymbolException > when

[Biojava-l] Phred Sequence

2003-02-19 Thread David Waring
I am writing code to parse a .phd file and create a PhredSequence. It is failing with an IllegalSymbolException when I have an 'n' in the sequence. Do CrossProductAlphabets only take AtomicSymbols? David Exception in thread "main" org.biojava.bio.symbol.IllegalSymbolException: Token `([cytosine