Re: [Biojava-l] Problem with ProfileHMM source

2002-07-24 Thread Matthew Pocock
Hello Tisanai, Feel free to modify this code to represent the profile HMM you want. It was code that I knocked up while trying to debug the DP toolkit, and I never re-visited it to make sure it worked, or even that it was a sane architecture. I'm only in intermitant net contact until BOSC/ISMB (

Re: [Biojava-l] Problem with ProfileHMM source

2002-07-24 Thread Lachlan Coin
Hi Tisanai, I think you are right. Does anyone mind if I make this (minor) update? Lachlan > --__--__-- > > Message: 6 > From: "Tisanai" <[EMAIL PROTECTED]> > To: <[EMAIL PROTECTED]> > Date: Wed, 24 Jul 2002 13:27:58 +0100 > Subject: [Biojav

[Biojava-l] Problem with ProfileHMM source

2002-07-24 Thread Tisanai
Hi, I have a problem with ProfileHMM source. In the code line 223 that is if(i > 1) { createTransition(dO, dN); createTransition(dO, mN); createTransition(dN, iN); } If it is like this there will be no transition from d-1 to i-1 right?