Re: [Biojava-l] Protein CharacterTokenization

2005-07-24 Thread mark . schreiber
t; <[EMAIL PROTECTED]> Sent by: [EMAIL PROTECTED] 07/24/2005 10:14 AM To: cc: (bcc: Mark Schreiber/GP/Novartis) Subject: [Biojava-l] Protein CharacterTokenization Hi, There is something strange with the protein alphabet CharacterTokenization. It kn

[Biojava-l] Protein CharacterTokenization

2005-07-23 Thread Tal Blum
Hi, There is something strange with the protein alphabet CharacterTokenization. It knows how to parse the ambiguity symbol 'X', but it does not contain the other way around mapping of the protein alphabet ambiguity symbol to 'X'. Is that the way it should be or is that a bug? Can someone suggest a