Re: [Biojava-l] RNATools bug

2001-10-06 Thread Thomas Down
On Fri, Oct 05, 2001 at 08:06:23PM -0400, Cox, Greg wrote: > When converting a DNA strand to an RNA strand, RNATools has a hardcoded T -> > U and returns the symbol otherwise. This breaks if an ambiguous nucleotide > is passed in, since they don't trip the T check. I looked in the alphabet > XML

[Biojava-l] RNATools bug

2001-10-06 Thread Cox, Greg
When converting a DNA strand to an RNA strand, RNATools has a hardcoded T -> U and returns the symbol otherwise. This breaks if an ambiguous nucleotide is passed in, since they don't trip the T check. I looked in the alphabet XML file, and there are no ambiguous RNA symbols. The use case I'm