[Biojava-l] RE: [BioSQL-l] location in features

2005-04-28 Thread Richard HOLLAND
OK. I ran your code against biojava-live and my Oracle db and got the same errors as you report. On further analysis I found that, as your feature should have no location (Location.empty), if you look in the database it doesn't have any there either, which is correct. However the code that extrac

[Biojava-l] Re: [BioSQL-l] location in features

2005-04-28 Thread Martina
I'm using MySQL, biojava-1.4pre1, biosql,v 1.40 Richard HOLLAND wrote: Hullo Martina. I must admit I am confused. I have been using BioJava+BioSQL to load Genbank records with features with no trouble, they always come out again with no exceptions raised and none missing. I am using Oracle, but thi

[Biojava-l] RE: [BioSQL-l] location in features

2005-04-27 Thread Richard HOLLAND
Hullo Martina. I must admit I am confused. I have been using BioJava+BioSQL to load Genbank records with features with no trouble, they always come out again with no exceptions raised and none missing. I am using Oracle, but this shouldn't make a difference as the SQL code that looks for features