; -Original Message-
> From: Cox, Greg [mailto:[EMAIL PROTECTED]]
> Sent: Monday, August 27, 2001 4:49 PM
> To: 'Michael Muratet'; BioJava
> Subject: RE: [Biojava-l] Remote location exception
>
>
> Okay, this should be handled now. It took longer than
Okay, this should be handled now. It took longer than I expected, my
apologies for that.
I couldn't figure out the RemoteFeature.Resolver bit, so could someone with
knowledge look at EmblLikeLocationParser line 231? Right now it's just set
to null.
Please let me know if I wound up breaking
On Wed, Aug 22, 2001 at 08:45:16AM -0500, Michael Muratet wrote:
>
> Note: I've switched to a plain-text editor.
Thanks :-).
> I'll take a look at the RemoteFeature class and see what I can do with
> it. From my point of view I'd vote skip the feature and alert the
> calling method so that it c
life,
EmblLikeLocationParser line 392 is where the exception gets thrown. It can
be caught and skipped in FeatureTableParser.
Greg
> -Original Message-
> From: Michael Muratet [mailto:[EMAIL PROTECTED]]
> Sent: Wednesday, August 22, 2001 9:45 AM
> To: BioJava
> Subject: Re: [Biojav
Thomas Down wrote:
>
>
> - Skip the sequence
>
> - Skip just that feature
>
> - Abort the whole job (screaming exception)
>
> - Create a RemoteFeature
>
> - Create a truncated feature, with the correct type, but only
> covering the `local' segments of the actual location.
>
>
On Wed, Aug 22, 2001 at 09:54:14AM +0100, Keith James wrote:
>
> Michael> I can live with this, but I would like to catch the
> Michael> exception in my code so that I can skip further
> Michael> calculations. The exception is apparently caught
> Michael> somewhere in biojava. I'v
> "Michael" == Michael Muratet <[EMAIL PROTECTED]> writes:
Ack! HTML...
Michael> transitional//en"> Greetings All I've
Michael> encountered my first sequence which contains a "join" in
Michael> a cds feature. I'm using the latest release version
Michael> of biojava, with s
Greetings All
I've encountered my first sequence which contains a "join" in a cds
feature. I'm using the latest release version of biojava, with some
code that looks like:
StreamReader
stream = new StreamReader(new BufferedReader(new InputStreamReader(inputStream)),
