Hi Mark,
You can convert HMMs into kernels (assuming that they are fully
symetrical pairwise aligners) using the biojava DP package. You will
have to write a bit of code to capture the agregates of the
forwards/backwards scores into a ModelTrainerContext (see
BaumWelchTrainer for an example o
Hi -
I am thinking of using SVM's and I have a question about the SVM package.
Is there a way of converting an HMM into a kernel as per the technique of
Jaukkola and Haussler?
Mark
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Mark Schreiber Ph: 64 3 4797875
R
