On Wed, Apr 02, 2003 at 11:29:50AM -0800, Ren, Zhen wrote:
>
> So, obviously the method SeqIOTools.readFastaProtein() uses a space (probably all
> kinds of whitespace) as delimiters to parse whatever into the name property in a
> sequence. My question is how I can specify my own delimiter and t
Hi, there,
I have a protein dataset in FASTA format. The sequence has an ID, followed by a
description as shown below:
>AAP6; Sequence encoded by leader sequence of core antigen.
gglfhlcliiscscptvqasklclgwl
If I use the snippet attached at the end of this email, I will get the result with
Hi...
There was a bug in SeqIOTools which meant that, if you used
it's convenience methods for parsing protein files, it would
still try to parse them using the DNA alphabet.
This is now fixed in CVS for both the trunk and release-1_1-branch.
I'll aim to push out a 1.11 tommorow, including this
