RE: [Biojava-l] Sequence Alignment

> Finally, I think that I will have to come up with a new class > encapsulating > an alignment of multiple very long sequences that overlap on > their ends. > Such as shown below. > > - - > -- >

[Biojava-l] Sequence Alignment

I plan to build (or find) a tool that takes multiple, large DNA sequences (BAC-sized), finds the overlaps and presents them in a GUI interface that allows users to view the overlapping sequences in a pictoral mode and to zoom in to actual sequence. This is the first stage of a project that will ge