30/2004 11:54 AM
To:
cc: (bcc: Mark Schreiber/GP/Novartis)
Subject: [Biojava-l] Blast SAX parser output
Is there any way to stop the blast parser code from outputting progress? I
get lots of the following and its clogging up my unix mailbox as the job
is run th
Is there any way to stop the blast parser code from outputting progress? I get
lots of the following and its clogging up my unix mailbox as the job is run
through cron:
obj=score 317
obj=expectValue 7e-86
obj=numberOfIdentities 158
obj=alignmentSize 1
On Thu, 26 Jun 2003, Russell Smithies wrote:
I normally use a bash script with sed for this but i think it's still
worth having.
Mind if I stick it into the javadocs somewhere within the blastXML
package?
Regards,
David
> Some people may call this cheating but I wrote a simple utility
> pre-pro
Some people may call this cheating but I wrote a simple utility
pre-processor for blast XML to convert it into something a basic SAX parser
can read :-)
---
import java.io.*;
public class XMLPreProcessor{
/**
* A simple utility method t
