Sorry for answering the email myself...
after looking at it again, I think it is adequate to treat these three
elements (query-ID, query-def and query-len) as annotations. There is no
sense in assigning them to an unknown sequence, right?
I have implemented it this way and it works fine,
thank
Hi,
I have written a BlastParser for xml based BLAST results, in order to
reconstruct SeqSimilaritySearchResult instances from xml files returned by
the NCBI for BLAST requests.
In constructing the searchresult, I use
SequenceBuilder sb = new SimpleSequenceBuilder();
SeqSimilaritySearchResult
