[Biojava-l] help on blast

2005-12-01 Thread Parveen k
Thanks for all your ideas. It was really useful . Parveen Date: Wed, 30 Nov 2005 09:42:51 -0800 (PST) From: "W. Eric Trull" <[EMAIL PROTECTED]> Subject: [Biojava-l] help on blast To: biojava-l@biojava.org Cc: [EMAIL PROTECTED], [EMAIL PROTECTED] Message-ID: < [EMAIL PROTECTED]&

[Biojava-l] help on blast

2005-11-30 Thread W. Eric Trull
I have the same situation where I work, except I have a Swing client instead of an applet. I decided to use NCBI's BLAST implementation (http://www.ncbi.nlm.nih.gov/BLAST/download.shtml) invoked using a command to org.biojava.utils.ExecRunner. I then wrapped the whole thing in a Web Service, whic

Re: [Biojava-l] help on blast

2005-11-30 Thread Francois Pepin
Hi Parveen, This might not be as easy as you might like. The applet runs on the client, so you need the applet to communicate remotely to the server to send the sequence. Then the easiest way would be for the server to call blast on the command-line with the sequence (which is pretty easy), parse

[Biojava-l] help on blast

2005-11-30 Thread Parveen k
Hi I'm pretty new to bioinformatics.i have to incorparate balst in my applet.so that when the client enters the sequence ,it should perform the blast search against the database we have and return the result.can anyone guide me in this regard. -- Regards Parveen K YOU MAY SAY I AM A DREAMER, B