[Biojava-l] Multiple alignment display issues

2005-11-28 Thread Russ Kepler
Further in my efforts in using the FlexibleAlignment class in conjunction with the display the alignments I have created some test code, reproduced below. The sequences are all displaying, but not in the alignment range. Am I simply missing something simple here, like a symbol renderer that ha

[Biojava-l] multiple alignment

2001-06-26 Thread Abdullatif Alghanim
Hi, I'm trying to find java code for multiple sequence alignment. I'm looking for something that uses dynamic programming or matrix multiplication methods. I know that time complexity grows exponentially with this technique. I would like to see the effects of parallesizing. Dows anyone know