rtis)
Subject: [Biojava-l] Need Help
Hi..
Anybody know how to retrieve the annotation property
"ORIGIN"
My code look like this
while(sequences.hasNext()){
try {
seq = sequences.nextSequence();
//Annotation
Annotation anno = seq.getAnnotation();
//print each key value pair
for (It
Hi..
Anybody know how to retrieve the annotation property
"ORIGIN"
My code look like this
while(sequences.hasNext()){
try {
seq = sequences.nextSequence();
//Annotation
Annotation anno = seq.getAnnotation();
//print each key value pair
for (Iterator i = anno.keys().iterator(); i.hasNext();
)
Hi,
I am a beginner in biojava as well bioinformatics. I
hope you can advice on the obstacles I am facing now.
I am trying to follow your example about the profile
HMM at
http://www.biojava.org/docs/bj_in_anger/profileHMM.htm,
and I try to fill in those missing codes that are
required. And fina
mat, but I don't
think it includes having spaces in the sequence.
Fran?ois
-Original Message-
From: [EMAIL PROTECTED]
[mailto:[EMAIL PROTECTED]] On Behalf Of zhao guijun
Sent: 17 f¨¦vrier, 2003 21:00
To: [EMAIL PROTECTED]
Subject: [Biojava-l] need help
hello, could anyone tell me why I got
hello, could anyone tell me why I got such errors?
/usr/java2/bin/java ReadFasta imsIND020717.fas DNA
org.biojava.bio.symbol.IllegalSymbolException: This tokenization doesn't contain
character:
at
org.biojava.bio.seq.io.CharacterTokenization.parseTokenChar(CharacterTokenization.java
> Sent: Tuesday, July 24, 2001 6:20 AM
> To: '[EMAIL PROTECTED]'
> Subject: RE: [Biojava-l] need help for SimpleSequenceBuilder class
>
>
> I don't think that this is related to BioJava. I searched the source for
> CORBA and SeqDBImpl, neither showed up. I also
[EMAIL PROTECTED]'; [EMAIL PROTECTED]
> Cc: [EMAIL PROTECTED]
> Subject: RE: [Biojava-l] need help for SimpleSequenceBuilder class
>
>
> Hi Bruce,
> I've done a lot with Genbank files, and the problem isn't
> actually in
> SimpleSequenceBuilder, that's j
try to get a fix into CVS later
today.
Greg
-Original Message-
From: Bruce Ling [mailto:[EMAIL PROTECTED]]
Sent: Sunday, July 22, 2001 11:17 AM
To: [EMAIL PROTECTED]
Cc: [EMAIL PROTECTED]
Subject: [Biojava-l] need help for SimpleSequenceBuilder class
Hi, Thomas,
As I saw the doc s
Hi,
Thomas,
As I saw the doc
says you are the author of SimpleSequenceBuilder class, I am asking for
help with the following problem?
I am in the way of
using biojava GenbankFormat class, the code is as following:
{ SequenceFormat gFormat =
new GenbankFormat(); SequenceBuilderFac
