Re: [Biojava-l] reading sequences from xml files...

2003-09-08 Thread Jan Würthner
Am Monday 08 September 2003 11:40 schrieb Matthew Pocock: > >> [...] > > What do you do at the moment? Do you have your own > parsers, or do you use somebody elses? I have written an XML parser (Handler) for NCBI's blast output, constructing SeqSimilaritySearchResult instances by hand. I first t

Re: [Biojava-l] reading sequences from xml files...

2003-09-08 Thread Matthew Pocock
--- Jan Würthner <[EMAIL PROTECTED]> wrote: > > Hi, > > does anyone know, if there is a biojava way to > construct a Sequence object by > reading sequence data from an XML file? Hi Jan, Asking if we have parsers for XML is a bit like asking if we have parsers for ASCII - there are loads of w

[Biojava-l] reading sequences from xml files...

2003-09-08 Thread Jan Würthner
Hi, does anyone know, if there is a biojava way to construct a Sequence object by reading sequence data from an XML file? I store all the information in XML files (e.g. connecting via http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=text&db=Nucleotide&dopt=XML&uid=1234). I know that SeqIOTool