You could try
if(!inGapState && (seq[i].symbolAt(j) == gap || seq[i].symbolAt(j) ==
AlphabetManager.getGapSymbol()))
- Mark
"Dan Cardin" <[EMAIL PROTECTED]>
Sent by: [EMAIL PROTECTED]
12/21/2005 04:16 PM
To: biojava-l@biojava.org
cc: (bcc: Mark Schreiber/GP/Nova
I think you could try swapping the use of == for equals() when testing
for equivalence to the gap symbol. It _should_ be the same literal
object, but maybe not. equals() will work in both cases but == will not.
cheers,
Richard
Richard Holland
Bioinformatics Specialist
GIS extension 8199
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