Re: [Biojava-l] Parse a Blast

Hello, Mark Thanks for the answer... The parser you talked me about, may be the good one... But I'm maybe not enought good in Java and I can't use it. I spent all the morning trying to understand this class and how it works, but, nothingI didn't understand how I can use it... Thank you for a

Re: [Biojava-l] Parse a Blast

Hello - I suspect the problem is that you are using the BlastLikeSAXParser. This was written in the days before blast xml was available (and stable) and is an adapter that parses a non-xml blast report and produces SAX events. The parser you want is org.biojava.bio.program.sax.blastxml.BlastXML