Re: [Biojava-l] SAXException with BLAST errors

2005-12-14 Thread W. Eric Trull
pe. > > - Mark > > > > > > "W. Eric Trull" <[EMAIL PROTECTED]> > 12/13/2005 09:42 AM > > > To: Mark Schreiber/GP/[EMAIL PROTECTED] > cc: biojava-l@biojava.org, > [EMAIL PROTECTED] > Subject:

Re: [Biojava-l] SAXException with BLAST errors

2005-12-12 Thread W. Eric Trull
No, I use BioJava to write the user's query sequence as a fasta file before feeding it to BLAST. I just copied a differently formatted sequence into my post. Thanks. -Eric Trull --- [EMAIL PROTECTED] wrote: > Not exactly sure what the problem is here but it looks like your input is > not in F

Re: [Biojava-l] SAXException with BLAST errors

2005-12-12 Thread mark . schreiber
Not exactly sure what the problem is here but it looks like your input is not in FASTA format so that might be causing a problem?? "W. Eric Trull" <[EMAIL PROTECTED]> Sent by: [EMAIL PROTECTED] 12/13/2005 08:22 AM To: biojava-l@biojava.org cc: (bcc: Mark Schreiber/G