Re: [Biojava-l] nested features

2005-05-23 Thread Martina
It looks like it was a database problem and had nothing to do with biojava - since MySQL 4.1.12 is running, I don't have that problem anymore. Sorry to have bothered you! Martina ___ Biojava-l mailing list - Biojava-l@biojava.org http://biojava.or

Re: [Biojava-l] nested features

2005-05-19 Thread Martina
Thanks for your interest, Richard, I should have made this clearer: yes, I'm expecting the second output: retrieving AF100928 AF100928 contains 1 features Source: ncbi Type: gen contains: 2 Second Level: Source: AIF Type: siRNA contains: 1 Second Level: Source: AIF 5`450 / AIF 3`682 Type: Amplicon

RE: [Biojava-l] nested features

2005-05-18 Thread Richard HOLLAND
Just to get this straight, if I follow your code correctly, then the second example output you should be seeing is the correct one. Could you confirm that this is what you are expecting? At least then it gives us something to work towards as a definite known correct answer. It would also be hel