It looks like it was a database problem and had nothing to do with
biojava - since MySQL 4.1.12 is running, I don't have that problem
anymore. Sorry to have bothered you!
Martina
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Thanks for your interest, Richard,
I should have made this clearer: yes, I'm expecting the second output:
retrieving AF100928
AF100928 contains 1 features
Source: ncbi Type: gen contains: 2
Second Level: Source: AIF Type: siRNA contains: 1 Second Level:
Source: AIF 5`450 / AIF 3`682 Type: Amplicon
Just to get this straight, if I follow your code correctly, then the second
example output you should be seeing is the correct one. Could you confirm that
this is what you are expecting? At least then it gives us something to work
towards as a definite known correct answer.
It would also be hel