Re: [Biojava-l] parsing EMBL files

2004-10-25 Thread Lorna Morris
Hi Mark Thanks for your answer. I can see the logic, it is an odd way to represent a frameshift by using an overlap in a join statement. It seems easier for me to not call mergeLocations in the first place instead of recovering the sub-locations from the MergeLocation instance. I spotted someth

Re: [Biojava-l] parsing EMBL files

2004-10-21 Thread mark . schreiber
I guess the logic was, if two sublocations overlap then they should be merged. Apparently that is not always the case : ( I think that the Location that is formed will be an instance of a MergeLocation in which case it should be possible to recover the sub-locations Lorna Morris <[EMAIL PR

Re: [Biojava-l] Parsing EMBL files from Ensembl

2002-11-21 Thread Thomas Down
On Thu, Nov 21, 2002 at 09:23:58AM +0100, Stein Aerts wrote: > > Since today, apparantly something changed on the "export data" function > of Ensembl. When retrieving a gene based on its ensembl id, e.g. > ENSG0110092 with 2000 bp on either side, and requesting only gene > features, then un