Oups! My mistake (and apologies) about the constructors and cutType.
Now, I must disagree with the overhangs. When the cut is not bluntended, it
generates a little asymetrical overhang or piece of single stranded DNA which
is designated by its location at the end 3' or 5' of the strand of DNA it
>BaeI generates 3' overhangs on both sides so DownstreamEndType equals 1
>(OVERHANG_3PRIME).
i don't think so. you can refer the record in rebase database.
<1>BaeI
<2>
<3>(10/15)ACGTAYC(12/7)
5'
3'
N N
>From zhenqing ye:
0(#DownstreamEndType)
24 (#DownstreamCut[0])
19 (#DownstreamCut[1])
BaeI generates 3' overhangs on both sides so DownstreamEndType equals 1
(OVERHANG_3PRIME).
Looking at the code, I just found another bug. In RestrictionEnzyme.java, the
first public cons
I was going to patch this in CVS but it seems Richard beat me to it!
Mark Schreiber
Principal Scientist (Bioinformatics)
Novartis Institute for Tropical Diseases (NITD)
10 Biopolis Road
#05-01 Chromos
Singapore 138670
www.nitd.novartis.com
phone +65 6722 2973
fax +65 6722 2910
zhenqing ye
Hi -
This does look like an error although I'm no expert on restriction
enzymes. Can anyone else comment?
If you do find the source of the error please let us know.
- Mark
zhenqing ye <[EMAIL PROTECTED]>
Sent by: [EMAIL PROTECTED]
05/10/2005 03:04 PM
To: biojava-l@biojava.or
