On Wed, Apr 24, 2002 at 09:57:15PM +0100, Keith James wrote:
>
> Most of the problem seems to be the ChangeSupport constructors
> chaining through with a hard-coded null value for a Set which gets
> passed to the HashSet constructor. I've replaced this with
> Collections.EMPTY_SET for now and the
In the "Doesn't this all waste memory?" subsection of the "BioJava: Symbols
and SymbolLists" section of the tutorial, you claim "there are just four
`singleton' Symbol objects which represent the symbols found in the DNA
alphabet." This is not an example of the Singleton design pattern. It is
an
You're right -- it is an instantiation of the flyweight design pattern,
where each flyweight instance is a singleton.
michael
On Thu, 25 Apr 2002, James Carman wrote:
> In the "Doesn't this all waste memory?" subsection of the "BioJava: Symbols
> and SymbolLists" section of the tutorial, yo
No, each flyweight instance is not a singleton. It is a single instance of
a class, that's true. However, there are also other instances of the same
class. In the singleton design pattern, exactly one instance of the class
exists. In the flyweight pattern, multiple instances of the class exist
Dear Sir/ Madam,
I would like to know how i can study and learn to devleop programs on
bio java.
Thanx
Regards,
Cleophus Pereira
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> "James" == James Carman <[EMAIL PROTECTED]> writes:
James> No, each flyweight instance is not a singleton. It is a
James> single instance of a class, that's true. However, there are
James> also other instances of the same class. In the singleton
James> design pattern, exactly one
Ah yes, I see the distinction.
Very clever.
So how exactly should we update the documentation?? :)
michael
On 25 Apr 2002, Phillip Lord wrote:
> > "James" == James Carman <[EMAIL PROTECTED]> writes:
>
> James> No, each flyweight instance is not a singleton. It is a
> James> sing
Much as I would like to blame Matthew for the Distribution Serialization
problem unfortunately the problem comes from the OrderNDistributions not
behaiving well during serialization. Somehow even though
SimpleDistribution is serializable the SimpleDists in the OrderNDist
seem to go AWOL. I haven't
Hi -
I have been using the following snippet of code to read files from xembl
that are in AGAVE format. Features seem to be added to the constructed
sequence object ok but annotations seem to go missing.
Do I need to add some sort of listener somewhere? I'm a bit concerned
about using the SeqIOA
Hi -
What is the proceedure for building and or writing a biojava object with
GAME? Particularly what should the SeqIOListener be?
- Mark
Mark Schreiber
Bioinformatics
AgResearch Invermay
PO Box 50034
Mosgiel
New Zealand
PH: +64 3 489 9175
FAX: +64 3 489 3739
===
On Friday 26 Apr 2002 5:57 am, Schreiber, Mark wrote:
> Hi -
>
> What is the proceedure for building and or writing a biojava object with
> GAME? Particularly what should the SeqIOListener be?
>
The current GAME code is a read-only implementation at this stage.
The other problem is that GAME itse
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