[Biojava-l] Dazzle 1.01

Hi, I've just released a new version of Dazzle modular DAS server. It's available from the usual place: http://www.biojava.org/dazzle/ The main change since version 1.00 is the addition of a new plugin which allows Dazzle annotation servers to be set up backed by SQL databases in the L

[Biojava-l] SimpleGappedSymbolList from a String

Hi all, I have a couple of 'novice' questions... I can't seem to figure out how to create a SimpleGappedSymbolList from a String. I want to parse "-AQSD--VP-" and create a SimpleGappedSymbolList from it. ProteinTools has methods to return a SymbolList, Sequence, and GappedSequence from a String,

[Biojava-l] accessing the HSP alignment using biojava

hello, and thank you for your contribution to biojava - i'm following the example of how to parse blast alignments outlined on your website here: http://www.biojava.org/docs/bj_in_anger/ExtractSearchInformation.htm now, i'm curious to access the consensus string that describes the relationship b