Dear all,
I was just wondering if I can perform HMMer searches
through BioJava. I did try on www to find out but
could not figure out.
Actually I want to write a Java class to perform
HMMer searches.
Kind Regards,
Aijaz.
There was some class in biojava that writes informations in ASN.1 format?
Thanks.
Felipe Albrecht
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Do you mean you want to make an HMM like HMMER or you want to launch HMMER
processes from your JVM?
- Mark
Aijazuddin Syed <[EMAIL PROTECTED]>
Sent by: [EMAIL PROTECTED]
07/07/2005 05:20 AM
Please respond to aijaz_bio
To: biojava-l@biojava.org
cc: (bcc: Mark Schrei
No -
The closest approximation would be GenBankXML (biojava can read it, but I
don't think it can write it). Apparently GenBankXML is an abstraction of
NCBIs ASN.1
If you want to do it you would need to implement SequenceFormat to read
and write ASN.1
- Mark
Felipe Albrecht <[EMAIL PROTE
