[Biojava-l] Global Alignment

Hello, I just implemented the Needleman-Wunsch-Algorithm and an object for handling substitution matrices like BLOSSUM, PAM, GONNET and so on. It parses a matrix file and provides a method to get the costs for changing Symbol A to Symbol B. This is realized by two hashes and a private int[][]

[Biojava-l] Globla Sequence Alignment

Hello, I just implemented the Needleman-Wunsch-Algorithm and an object for handling substitution matrices like BLOSSUM, PAM, GONNET and so on. It parses a matrix file and provides a method to get the costs for changing Symbol A to Symbol B. This is realized by two hashes and a private int[][]

[Biojava-l] Global Sequence Alignment

Hello, I just implemented the Needleman-Wunsch-Algorithm and an object for handling substitution matrices like BLOSSUM, PAM, GONNET and so on. It parses a matrix file and provides a method to get the costs for changing Symbol A to Symbol B. This is realized by two hashes and a private int[][] matr

[Biojava-l] Global Sequence Alignment

Here is the interface I forgot to send. -- Lust, ein paar Euro nebenbei zu verdienen? Ohne Kosten, ohne Risiko! Satte Provisionen für GMX Partner: http://www.gmx.net/de/go/partner/* *BioJava development code * * This code may be freely distributed and modified under the *

[Biojava-l] Global Sequence Alignment

Hello, I just implemented the Needleman-Wunsch-Algorithm and an object for handling substitution matrices like BLOSSUM, PAM, GONNET and so on. It parses a matrix file and provides a method to get the costs for changing Symbol A to Symbol B. This is realized by two hashes and a private int[][] matr

[Biojava-l] Global Sequence Alignment

Hello, I just implemented the Needleman-Wunsch-Algorithm and an object for handling substitution matrices like BLOSSUM, PAM, GONNET and so on. It parses a matrix file and provides a method to get the costs for changing Symbol A to Symbol B. This is realized by two hashes and a private int[][] mat