On Dec 16 2005, Mark Fortner wrote:
Richard,
Thanks for the example. Your approach is very similar to a non-BioJava
approach that I had worked out earlier. I was wondering if the
BioJava(x) API provides any performance benefit over simply running a
window along a character stream?
The wor
Hello to all,
First would like to be thankful all, in special to the Mark and Gregory, for
having answered.
Explaining of form more detailed my doubt:
I was trying to locate definitive regions in a DNA sequence (-10 box and
-35 box). These regions are small stretches of 6 pairs o
On Friday 16 December 2005 09:25, David Huen wrote:
>
> If that is the kind of case you want to deal with, I would believe the
> SSAHA code in BJ may be adapted to your purposes but this comment does not
> arise from direct personal experience.
The biojava SSAHA code is likely to be quite efficien
