Hello again,
I have continued using the Genbank parser, but this time with Genbank
files coming from NCBI :)
I really appreciate the example from the documentation that converts a
Genbank file into an EMBL file. I have to say, it is really easy to use.
I nevertheless have a question concern
Hi Morgane -
Turned out to be a problem with a greedy regexp parsing the LOCUS tag.
This is fixed in CVS. Let me know if something else is a problem.
- Mark
Morgane THOMAS-CHOLLIER <[EMAIL PROTECTED]>
Sent by: [EMAIL PROTECTED]
02/14/2006 09:33 PM
To: biojava-l@biojava.org
Hi Mark,
I have downloaded the fixed version and tested it with my large file.
Works great.
Thank you very much,
Morgane.
[EMAIL PROTECTED] wrote:
Hi Morgane -
Turned out to be a problem with a greedy regexp parsing the LOCUS tag.
This is fixed in CVS. Let me know if something else is a
I think these properties should be going to the (Rich)Annotation bundle.
- Mark
Morgane THOMAS-CHOLLIER <[EMAIL PROTECTED]>
Sent by: [EMAIL PROTECTED]
02/15/2006 04:56 PM
To: biojava-l@biojava.org
cc: (bcc: Mark Schreiber/GP/Novartis)
Subject:Re: [Bi
Hello,
I have a question regarding the BioSQL-schema-scripts.
The tutorial on installing BioSQL
(http://www.biojava.org/tutorials/biosql.html) says that three scripts
are required:
biosqldb-pg.sql
biosql-accelerators-pg.sql
biosqldb-assembly-pg.sql
However, the 'assembly'-script can not be f
Wow, that tutorial is out of date!
The assembly sql is not required any longer. It was specifically put in by
David Huen (I think) to allow him to store assembly data in biosql. Can
anyone comment on the need for the accelerators?
As for you second point I would discourage the use of the enrich
