Anyone modify ABITrace to fetch and return the quality calls now available in
AB1 files?
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In working with FlexibleAlignment I've found a problem. When an overlap is
empty the
underlying code in AbstractULAlignment will return nulls for positions not
containing
symbols, and this confuses things later on. An example program below will
demonstrate
a simple case of the problem (code
On Friday 25 November 2005 04:39 am, Matthew Pocock wrote:
> This should be returning the symbol AlphabetManager.getGap(), which should
> be the same as EMPTY_ALPHABET.getGap(). Could somebody fix this?
I wouldn't think that a gap symbol would be appropriate for the areas outside
the sequence to
Further in my efforts in using the FlexibleAlignment class in conjunction with
the display the alignments I have created some test code, reproduced below.
The sequences are all displaying, but not in the alignment range. Am I
simply missing something simple here, like a symbol renderer that ha
On Wednesday 01 February 2006 11:41 pm, Heather Kent wrote:
> I would like to write a small application that would concatenate abi or scf
> chromatograms and write out a new chromatogram file..
> has anyone done something similar to this or seen any code that would be
> helpful for me, i am new at
