[Biojava-l] Strang change of Location class

ocation class org.biojava.bio.symbol.BetweenLocationnew feature location: class org.biojava.bio.symbol.RangeLocation   Why is the feature location changed from BetweenLocation to RangeLocation during the conversion ??   Any help would be appreciated,   David De Beule   ___ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l

[Biojava-l] seqString() produces stacktrace

ymbolList(AlphabetManager.java:1383) at org.biojava.bio.symbol.AbstractSymbolList.seqString(AbstractSymbolList.java: 102) Can this be a bug ? Any help would be appreciated, David De Beule ___ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l

[Biojava-l] removeGap problem with SimpleGappedSequence

legalSymbolException: Attempted to remove a gap at a non-gap index: 4 -> [] at org.biojava.bio.symbol.SimpleGappedSymbolList.removeGap(SimpleGappedSymbolLi st.java:426) Is this intented or a bug ? Thanks in advance, David De Beule - Original Message - From: "David Huen" <[EMA

Re: [Biojava-l] removeGap problem with SimpleGappedSequence

Hi, your first solution (new constructor: new GappedSymbolList(origSyms, mergeOriginalGaps) sounds good to me These new constructors for GappedSymbolList and GappedSequence would be very helpful. Thanks in advance. David - Original Message - From: "Matthew Pocock" <[EMAIL PROTECTED]> To