Andreas Tille pushed to branch master at Debian Blends Team / med
Commits: b3de1805 by Andreas Tille at 2022-02-18T11:44:48+01:00 Fix several names and remove packages that will probably never be touched - - - - - 5 changed files: - tasks/bio - tasks/bio-dev - tasks/covid-19 - tasks/imaging - tasks/imaging-dev Changes: ===================================== tasks/bio ===================================== @@ -868,7 +868,7 @@ X-Importance: efficient Recommends: mauve-aligner -Suggests: mcaller +Recommends: mcaller Recommends: mecat2 ===================================== tasks/bio-dev ===================================== @@ -24,9 +24,7 @@ Recommends: python3-biopython Suggests: python3-biopython-sql, python-biopython-doc -Suggests: python3-cogent3 - -Suggests: python3-mcaller +Recommends: python3-cogent3 Suggests: python3-joypy ===================================== tasks/covid-19 ===================================== @@ -103,8 +103,7 @@ Recommends: bedtools Recommends: multiqc -Recommends: artic -Homepage: https://github.com/nf-core/artic/blob/dev/bin/scrape_software_versions.py +Recommends: nf-core-artic Recommends: viralrecon Homepage: https://github.com/nf-core/viralrecon/blob/dev/bin/scrape_software_versions.py @@ -119,7 +118,7 @@ Recommends: ivar Recommends: varscan -Recommends: snpeff, snpsift +Recommends: snpeff Recommends: bcftools ===================================== tasks/imaging ===================================== @@ -43,9 +43,6 @@ Recommends: nifti2dicom, qnifti2dicom Recommends: sofa-apps -Recommends: python3-mvpa2 -Why: Suggested by maintainer Michael Hanke <michael.ha...@gmail.com> - Recommends: python3-nipy Why: Although listed in -dev task, it also has a strong focus on interactive data analysis. ===================================== tasks/imaging-dev ===================================== @@ -30,9 +30,6 @@ Recommends: libmaxflow-dev Suggests: liblimereg-dev -Recommends: python3-mvpa2 -Why: Suggested by maintainer Michael Hanke <michael.ha...@gmail.com> - Recommends: python3-nipy Recommends: python3-nipype @@ -43,7 +40,7 @@ Recommends: libvia-dev Recommends: odin -Recommends: libcv-dev +Recommends: libopencv-dev Recommends: libteem-dev @@ -157,6 +154,6 @@ Recommends: libxdf-dev Recommends: libsimpleitk1-dev, python3-simpleitk -Recommends: pytorch-vision +Recommends: python3-torchvision Recommends: libsight-dev View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/b3de1805c50daae9e5d82f51e0ab0887d7402ba0 -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/b3de1805c50daae9e5d82f51e0ab0887d7402ba0 You're receiving this email because of your account on salsa.debian.org.
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