Re: [BlueObelisk-discuss] SMARTS substructure search benchmark set

2010-04-21 Thread Greg Landrum
Hi Christian, A quick followup from Noel and Egon's posts: The unit testing code for the RDKit smarts parser/matcher is here: http://rdkit.svn.sourceforge.net/viewvc/rdkit/trunk/Code/GraphMol/SmilesParse/smatest.cpp For larger-scale/regression testing work, there is a collection of diverse SMARTS

Re: [BlueObelisk-discuss] SMARTS substructure search benchmark set

2010-04-21 Thread Egon Willighagen
Hi Christian, On Wed, Apr 21, 2010 at 12:14 PM, Noel O'Boyle wrote: > Do you mean a validation test set? I don't think there is any standard set. > You could take a look at the test suites of the various BO projects > (OpenBabel, CDK, RDKit, even JOELib) and put one together. > The CDK has an e

Re: [BlueObelisk-discuss] SMARTS substructure search benchmark set

2010-04-21 Thread Noel O'Boyle
Do you mean a validation test set? I don't think there is any standard set. You could take a look at the test suites of the various BO projects (OpenBabel, CDK, RDKit, even JOELib) and put one together. A standard set would be very useful. If you do create one, could you email this list with the d