Re: [BlueObelisk-discuss] Dummy element in bodr elements.xml

2010-12-30 Thread Egon Willighagen
On Fri, Dec 31, 2010 at 2:57 AM, Neumann, Steffen wrote: > but is it bodr's job to take care of implementation details > about indexing ? What if someone is coding > in pascal (where arrays start from 1 ...) Dummy atoms are at the level of atom types, and do not really belong in the elements file

Re: [BlueObelisk-discuss] Dummy element in bodr elements.xml

2010-12-30 Thread Neumann, Steffen
Hi, but is it bodr's job to take care of implementation details about indexing ? What if someone is coding in pascal (where arrays start from 1 ...) To me elements.xml is reference data, and I'd be quite surprised if my textbook PSE also started to contain an Xx. Reference data is not the plac

Re: [BlueObelisk-discuss] Dummy element in bodr elements.xml

2010-12-30 Thread Geoffrey Hutchison
> Is there any reason to have a dummy element ? What is the problem with having a dummy? It means all arrays will be properly indexed from 0, for one. For another, many programs add "Bq" or "Du" or "Xx" elements for ghost atoms, centroids, etc. -Geoff --- Prof. Geoffrey Hutchison Assistant Pro

[BlueObelisk-discuss] Dummy element in bodr elements.xml

2010-12-30 Thread Steffen Neumann
Hi, I just stumbled upon element "Xx" in http://bodr.svn.sourceforge.net/viewvc/bodr/trunk/bodr/elements/elements.xml?revision=57&view=markup#l29 Is there any reason to have a dummy element ? Could consider removing it ? It messes up using elements.xml without cleaning it ... Yours, Steffen --