[Blueobelisk-discuss] Indigo: a new open-source cheminformatics toolkit

2009-10-30 Thread Dmitry Pavlov
Hello all, We (SciTouch LLC) recently published our cheminformatics toolkit called Indigo. It consists of five software products: Bingo: Cartridge for Oracle database supporting a wide range of searches in molecule and reaction databases. Dingo: Molecule and reaction rendering library with cairo

Re: [Blueobelisk-discuss] Indigo: a new open-source cheminformatics toolkit

2009-10-31 Thread Dmitry Pavlov
Dear Egon, Thank you for your response. > Can you say some words on the data model you are using? Does it > support only molecules, or also protein structures (PDB files)? Is it > based on a simple chemical graph, or doing something more Dietz like? Sorry, I do not know what Dietz model is. Our

Re: [BlueObelisk-discuss] SMILES, CML

2009-12-10 Thread Dmitry Pavlov
Hello all, Sorry for barging in. > CanonicalSMILES is a major problem (if it wasn't then I suspect InChI > would not have been developed). The paper describing the > canonicalisation is seriously different from the implementation in the > program. Many of us (including me several times) have a

[BlueObelisk-discuss] Dingo rendering library now available in Java

2010-03-06 Thread Dmitry Pavlov
Hello all, A few months ago, Indigo cheminformatics toolkit from SciTouch was announced here. In case anybody is interested in Dingo (rendering library in this toolkit), here is a good news: Java wrapper for Dingo has become available. Please see the details here: http://groups.google.com/group/i