bug#52906: python-biopython conflicts with python-numpy

2021-12-31 Thread Ricardo Wurmus
zimoun writes: > Hi, > > On Fri, 31 Dec 2021 at 13:44, Ricardo Wurmus wrote: > >> I just realized that switching over to the new numpy is going to cause >> more than a 1000 rebuilds. So I’ll apply your patch on the master >> branch and build out the numpy upgrade on a separate branch. > > Tha

bug#52906: python-biopython conflicts with python-numpy

2021-12-31 Thread zimoun
Hi, On Fri, 31 Dec 2021 at 13:44, Ricardo Wurmus wrote: > I just realized that switching over to the new numpy is going to cause > more than a 1000 rebuilds. So I’ll apply your patch on the master > branch and build out the numpy upgrade on a separate branch. Thanks! A separate wip-* branch?

bug#52906: python-biopython conflicts with python-numpy

2021-12-31 Thread Ricardo Wurmus
zimoun writes: > Attached a proposed patch. I applied it with a small change: I also had to override the name as “python-numpy” in the derived packages. Thanks! -- Ricardo

bug#52906: python-biopython conflicts with python-numpy

2021-12-31 Thread Ricardo Wurmus
zimoun writes: > Hi Ricardo, > > On Fri, 31 Dec 2021 at 11:18, Ricardo Wurmus wrote: >> zimoun writes: > >> Back then we reverted to numpy 1.20.x as the default because of numba, >> which did not work with 1.21. I’m now upgrading numba (and llvmlite) to >> a more recent release candidate, wh

bug#52906: python-biopython conflicts with python-numpy

2021-12-31 Thread zimoun
Hi Ricardo, On Fri, 31 Dec 2021 at 11:18, Ricardo Wurmus wrote: > zimoun writes: > Back then we reverted to numpy 1.20.x as the default because of numba, > which did not work with 1.21. I’m now upgrading numba (and llvmlite) to > a more recent release candidate, which should bring compatibilit

bug#52906: python-biopython conflicts with python-numpy

2021-12-31 Thread Ricardo Wurmus
zimoun writes: > Hi, > > Using 7022eb6, the package ’python-biopython’ propagates > ’python-numpy’, i.e., python-numpy@1.20. Back then we reverted to numpy 1.20.x as the default because of numba, which did not work with 1.21. I’m now upgrading numba (and llvmlite) to a more recent release can

bug#52906: python-biopython conflicts with python-numpy

2021-12-30 Thread Leo Famulari
On Thu, Dec 30, 2021 at 10:13:48PM +0100, zimoun wrote: > $ guix package -m /tmp/manifest.scm -p /tmp/fail > The following packages will be installed: >python-biopython 1.76 >python-numpy 1.21.3 > > guix package: error: profile contains conflicting entries for python-numpy > guix packa

bug#52906: python-biopython conflicts with python-numpy

2021-12-30 Thread zimoun
Hi, Using 7022eb6, the package ’python-biopython’ propagates ’python-numpy’, i.e., python-numpy@1.20.3. However, because Guix installs by default the last version and: --8<---cut here---start->8--- $ guix package -A | grep 'python-numpy ' | cut -f1,2 python-nu