bug#54787: importer Bioconductor: no tarball, only Git

On Thu, 14 Apr 2022 at 15:57, Ricardo Wurmus wrote: > zimoun writes: > >> On Thu, 14 Apr 2022 at 13:43, Ricardo Wurmus wrote: >> >>> We probably should *not* use RELEASE_3_14 (or whatever) as the commit, >>> though, because that is a moving target. We need to resolve to the >>> actual commit

bug#54787: importer Bioconductor: no tarball, only Git

Ricardo Wurmus schreef op do 14-04-2022 om 13:43 [+0200]: > I wonder how the updater would need to be changed.  It would need to > know about the release branch and look for new commits in that branch > only. Perhaps would be useful? It adds a

bug#54787: importer Bioconductor: no tarball, only Git

zimoun writes: > On Thu, 14 Apr 2022 at 13:43, Ricardo Wurmus wrote: > >> We probably should *not* use RELEASE_3_14 (or whatever) as the commit, >> though, because that is a moving target. We need to resolve to the >> actual commit and use its hash. >> >> I wonder how the updater would need

bug#54787: importer Bioconductor: no tarball, only Git

Hi Ricardo, On Thu, 14 Apr 2022 at 13:43, Ricardo Wurmus wrote: > We probably should *not* use RELEASE_3_14 (or whatever) as the commit, > though, because that is a moving target. We need to resolve to the > actual commit and use its hash. > > I wonder how the updater would need to be changed.

bug#54787: importer Bioconductor: no tarball, only Git

zimoun writes: > First, note that annotations do not have Git repo; at least not always, > e.g., > > That’s fine. We just ignore annotation and experiment packages, and use git only for regular packages.

bug#54787: importer Bioconductor: no tarball, only Git

Hi Ricardo, On lun., 11 avril 2022 at 18:15, Ricardo Wurmus wrote: > zimoun writes: > >> $ guix import cran -a bioconductor CHETAH >> guix import: warning: failed to retrieve package information from >> https://cran.r-project.org/web/packages/CHETAH/DESCRIPTION: 404 (Not Found) >> guix import:

bug#54787: importer Bioconductor: no tarball, only Git

zimoun writes: > $ guix import cran -a bioconductor CHETAH > guix import: warning: failed to retrieve package information from > https://cran.r-project.org/web/packages/CHETAH/DESCRIPTION: 404 (Not Found) > guix import: error: failed to download description for package 'CHETAH' > > The reason

bug#54787: importer Bioconductor: no tarball, only Git

Hi, Consider the package CHETAH, included in Bioconductor release 3.14; but then, --8<---cut here---start->8--- $ guix import cran -a bioconductor CHETAH guix import: warning: failed to