Re: [caret-users] mapping SPM5 volumes in Caret

2007-03-26 Thread Donna Dierker
Hi Tobias, I don't recognize this problem. Hmmm. How about if I give it a try on my end. Can you upload one or more of your volumes here: http://pulvinar.wustl.edu/cgi-bin/upload.cgi From the 'QEventDispatcherUNIX::unregisterTimer error, I guess you're running Linux. We'll see if my

Re: [caret-users] Question: Setting resolution for main-window image capture in CARET?

2007-03-26 Thread John Harwell
Hi, We tell the software that writes the image to write the image in the highest quality possible. For JPEG format, this means that the image data is stored using the least compression (higher compression makes the file smaller but can result in loss of detail). There are no options

Re: [caret-users] mapping SPM5 volumes in Caret

2007-03-26 Thread Donna Dierker
Hi Tobias, Your metric files were only 30 lines long -- header but no data. Anyway, I suspect this is a case where Caret doesn't recognize your nifti1 .img and .hdr format. It's reading it as Analyze, which works, except you need to then set the origin. The attached captures

Re: [caret-users] mapping SPM5 volumes in Caret

2007-03-26 Thread Tobias Egner
Donna, thanks very much indeed, I think for now I will just go with the fix of manually re-setting the origin in the way you suggest. best wishes, Tobias. On 3/26/07, Donna Dierker [EMAIL PROTECTED] wrote: Hi Tobias, Your metric files were only 30 lines long -- header but no data. Anyway, I

Re: [caret-users] mapping SPM5 volumes in Caret

2007-03-26 Thread Donna Dierker
Note that when opening functional volumes in Caret, there's a checkbox: Volume is an SPM2 Volume with Right on Left Make sure it is either selected or deselected as needed. On 03/26/2007 09:52 AM, Tobias Egner wrote: Donna, thanks very much indeed, I think for now I will just go with the

Re: [caret-users] mapping SPM5 volumes in Caret

2007-03-26 Thread Tobias Egner
Donna, one last dumb question: How do I make sure that I get precisely the right origin parameters, since the origin I see when displaying my images in SPM5 is obviously not the correct one to use for displaying my images in Caret? Thanks, Tobias. On 3/26/07, Donna Dierker [EMAIL PROTECTED]

Re: [caret-users] mapping SPM5 volumes in Caret

2007-03-26 Thread Tobias Egner
Phantastic, I like being in luck! Thanks, T. On 3/26/07, Donna Dierker [EMAIL PROTECTED] wrote: Tobias, You're in luck. AFNI's 3dinfo gives me this output: Data Axes Orientation: first (x) = Right-to-Left second (y) = Posterior-to-Anterior third (z) = Inferior-to-Superior [-orient

Re: [caret-users] mapping SPM5 volumes in Caret

2007-03-26 Thread John Harwell
Caret Users, At this time, Caret only reads NIFTI files that are a single file with the .nii extension. The next release of Caret will be able to read NIFTI files that are in an Analyze hdr/img pair. -- John Harwell [EMAIL PROTECTED]