Re: [caret-users] the name

2007-03-14 Thread Ervin Berényi
Thank's Donna! On 13/03/07, Donna Dierker [EMAIL PROTECTED] wrote: Hi Ervin, I think the confusion stemmed from receiving a caret-users mailing list confirmation with a more personalized login and password around the same time you receive the download information. To download Caret, use this

Re: [caret-users] About Monkey to Human Deformation

2007-03-14 Thread Reza Rajimehr
Dear David, In the Apply Deformation Map dialog box, I specified the following items: 1) Deformation Map File: the 23-LDMK deform_map file 2) File Type: Metric 3) Flat Max Edge Length: 10.00 4) Metric Deformation: Nearest Node (not sure which one is better?) 5) Smooth One Iteration (Except Flat)

Re: [caret-users] About Monkey to Human Deformation

2007-03-14 Thread Donna Dierker
Hi Reza, Hmmm. I can almost replicate this behavior. When I load CARET_TUTORIAL_SEPT06/COMPARE_MACAQUE_HUMAN/RegF99toPALS_23-LDMK-VE_Macaque.F99UA1.RIGHT.Register-with-PALS_23-LDMK-VE.73730.spec.deform_map, both the individual and atlas directory buttons are disabled, but Data File and

Re: [caret-users] About Monkey to Human Deformation

2007-03-14 Thread John Harwell
Reza, Did you press the Data File... button to choose an input metric file for deformation? The Apply Deformation Map Dialog requires the user to select one specific data file for deformation, it does not deform all of the files automatically which is done as part of the spherical

[caret-users] Announcement: open access MR data (OASIS)

2007-03-14 Thread Daniel Marcus
Dear Colleagues, The Open Access Series of Imaging Studies (OASIS) is now available at www.oasis-brains.org http://www.oasis-brains.org/ . The data are publicly available under to a liberal Data Use Agreement available here: http://www.oasis-brains.org/app/template/UsageAgreement.vm. The

Re: [caret-users] Announcement: open access MR data (OASIS)

2007-03-14 Thread Donna Dierker
In case it becomes useful to anyone, these 12 OASIS subjects comprise the PALS_B12: OAS1_0006_MR1 Human_Buckner_Case06 OAS1_0009_MR1 Human_Buckner_Case04 OAS1_0054_MR1 Human_Buckner_Case01 OAS1_0061_MR1 Human_Buckner_Case11 OAS1_0111_MR1 Human_Buckner_Case07 OAS1_0152_MR1 Human_Buckner_Case05

[caret-users] Monkey Atlas and stereotaxic

2007-03-14 Thread Remya Nair
Hi Caret-Gods...! I have a question regarding Caret and monkey atlas. I apologize for the basic nature of these questions, but I am a newbie to Caret and that is all i have to say in my defense!!! We have T1 weighted 0.5 isotropic resolution anatomical images of monkey brain. The final aim

Re: [caret-users] Monkey Atlas and stereotaxic

2007-03-14 Thread Donna Dierker
Hi Remya, Glad to hear you got your hands on a T1 scan. There's no documentation I know of that covers what you want to do, but it's not that hard (if I understand it correctly). I think you'll just need two versions of your volumes (one AC-centered, one inter-aural) and two versions of

Re: [caret-users] About Monkey to Human Deformation

2007-03-14 Thread John Harwell
On Mar 14, 2007, at 3:40 PM, Reza Rajimehr wrote: The Data File button is disabled in my Caret, so I think I have to use the caret commands. Reza, The Data File button will be enabled once a deformation map file has been loaded. To load a deformation map file, press the Deformation

Re: [caret-users] About Monkey to Human Deformation

2007-03-14 Thread Donna Dierker
Hi Reza, See inline reply below. Donna On 03/14/2007 03:40 PM, Reza Rajimehr wrote: Hi Donna, The Data File button is disabled in my Caret, so I think I have to use the caret commands. Just a question: what are source and target paths in the first caret command. I assume that the source path