Re: [caret-users] PALS atlas labels to Freesurfer fsaverage

2009-10-19 Thread Homola
Hi Donna and David, it's fantastic! Exactly what I was looking for. You have helped me a lot... Many thanks again, György Von: caret-users-boun...@brainvis.wustl.edu [caret-users-boun...@brainvis.wustl.edu] im Auftrag von David Van Essen [vanes...@brai

Re: [caret-users] PALS atlas labels to Freesurfer fsaverage

2009-10-19 Thread Donna Dierker
Here is one of the messages David sent to Brad on 5/27/2009: > Hi Brad, > > Well, it has taken another month-plus, but we have now gotten a > mapping between PALS and fsaverage for both left and right hemispheres > that I am quite happy with. > > I made an extended dataset publicly accessible

Re: [caret-users] flatten surface

2009-10-19 Thread Donna Dierker
On 10/19/2009 01:06 PM, Taosheng Liu wrote: > Hi Donna, > I did select "Flatten full or partial hemisphere: Full hemisphere > (Ellipsoid) and morph sphere". I don't know about the names stuff. I > started with 3 files: spec, topo and coords of one right hemisphere > and they're named > S015_ri

Re: [caret-users] PALS atlas labels to Freesurfer fsaverage

2009-10-19 Thread David Van Essen
Gyogy (and others interested in mapping data between fsaverage and PALS-B12 in either direction): SumsDB contains relevant data in the following directory: http://sumsdb.wustl.edu/sums/directory.do?id=6612992&dir_name=REG_PALS_with_FREESURFER The subdirectory http://sumsdb.wustl.edu/sums/direc

Re: [caret-users] flatten surface

2009-10-19 Thread Donna Dierker
Hi Taosheng, Hmmm. These figures don't look consistent to me. The compressed medial wall view looks quite sane, with normal-looking template cuts; a reasonable looking calcarine (although you could track the fundus a better along the intermediate stretches); and a reasonable, albeit stingy m

Re: [caret-users] PALS atlas labels to Freesurfer fsaverage

2009-10-19 Thread Donna Dierker
Hi Gyorgy, I think this should be doable, because David and I did some work a while back to generate an improved PALS <-> fsaverage deformation for some orbitofrontal regions Brad Dickerson wanted. David did the final registration borders, and they're probably in sumsdb somewhere, but I'll wa