Re: [caret-users] .annot or .label conversion to caret

2012-03-16 Thread Rouhollah Abdollahi
the code that I sent creates the paintfiles on native space of subjects. before that you have to make new labels on fsaverage spcae by using mri_label2label like: for rh.V1.label mri_label2label --srclabel rh.V1.label --srcsubject SUB1 --trgsubject fsaverage --trglabel rh.V1_fsaverage.label --reg

Re: [caret-users] marmoset

2012-03-16 Thread Colin Reveley
thanks Matt. Chimp sounds interesting! I was really addressing the person who was making their own atlas, which I suspected of being marmoset. possibly not. On 16 March 2012 16:37, wrote: > Send caret-users mailing list submissions to >caret-users@brainvis.wustl.edu > > To subscribe or

[caret-users] Mapping 2D ROIs to 3D surface

2012-03-16 Thread Carissa Philippi
Hello, I am a new CARET user. I would like to create a figure to display a number of seed regions of interest (belonging to different attention networks) that I used for a resting-state functional connectivity analysis. I looked into the tutorials available for displaying foci as well as for mappi

Re: [caret-users] marmoset

2012-03-16 Thread Colin Reveley
also: is there any advice on making a surface from a marmoset MRI? the native MR resolution is 150um. the brain is about 2.5cm long. It has a basic primate plan, but very few sulci. ___ caret-users mailing list caret-users@brainvis.wustl.edu http://brain

Re: [caret-users] marmoset atlas

2012-03-16 Thread Matt Glasser
Unfortunately not. We'll have a chimpanzee atlas at some point in the future though. Peace, Matt. _ From: caret-users-boun...@brainvis.wustl.edu [mailto:caret-users-boun...@brainvis.wustl.edu] On Behalf Of Colin Reveley Sent: Friday, March 16, 2012 7:40 AM To: caret-users@brainv

Re: [caret-users] .annot or .label conversion to caret

2012-03-16 Thread Donna Dierker
I don't have the answers at my fingertips, but here are a couple of clues that I recall from recent experience doing this: * Enter "caret_command -help-full > /tmp/caret_command.txt" at the command line, and then use a text editor to read /tmp/caret_command.txt. Search for "file-convert" and l

[caret-users] marmoset atlas

2012-03-16 Thread Colin Reveley
I wonder, is there a caret atlas for any marmoset anatomy? There was a discussion a little while back regarding the construction of an atlas for a new species. Is that in fact common marmoset? will it be publicly available if so? I am presenting my own work to a lab in late june. the lab is loc