Hi Donna, Thanks for your reply and help. I segmented our macaque volume data using SureFit, not using FreeSurfer. Can I do registration by these datasets? or if not, could you or anyone please upload the datasets which can register individual SureFit segmentation with F99 atlas?
Thanks very much, TingYu On Tue, Jun 28, 2016 at 1:25 PM, Donna Dierker <do...@brainvis.wustl.edu> wrote: > It sure would be nice if sumsdb were working right now, but it's not, and > I have no quick-fix for getting it to work (though we are discussing ideas). > > Meanwhile, I'd like to narrow down which F99 individual to F99 > registration dataset you were looking for. If you segmented your monkey's > brain using Freesurfer, then maybe archives in this directory might be > helpful: > > http://brainmap.wustl.edu/pub/donna/ATLASES/MONKEY/ > login pub > password download > > There was this document: > > > http://brainmap.wustl.edu/pub/donna/ATLASES/MONKEY/FS-to-F99_Tutorial_Sept10.doc > (same login/password) > > I had these in my download directory, though there is no guarantee they > are the latest/greatest: > > -rw------- 1 donna velab 10272560 Feb 7 2014 FS-to-F99_Aug10.zip > -rw-r--r-- 1 donna velab 10114922 Apr 3 2014 > Figs-8-10_architectonic_compare.74k_f99.zip > -rw-r--r-- 1 donna velab 7797951 Apr 3 2014 > Figs-3_4_register-F99-with-Chip.R.74k_f99.zip > -rw-r--r-- 1 donna velab 4729026 Apr 3 2014 > Fig-1A_C_register-F99-with-Chip.R.74k_f99.zip > > I'm cc'ing Chad Donahue, who is a grad student in our lab who does primate > registration, among other things. > > I believe these datasets were the ones cited in this paper: > > Van Essen, D.C., Glasser, M.F., Dierker, D. and Harwell, J. (2011) > Cortical parcellations of the Macaque monkey analyzed on surface-based > atlases. Cerebral Cortex doi: 10.1093/cercor/bhr290. > > Ting-Gu and Cody: Confirm you have Freesurfer segmentations for your > monkeys. > > Chad: Comment on any later/greater docs/datasets/methods for registering > monkeys, if they're ready for public use. > > Everyone else: Speak up if you have versions of these datasets you > downloaded from sumsdb. I'm not 100% certain mine are final, but p>.8. > > > On Jun 27, 2016, at 6:58 PM, Cody Sarrazin <codysarra...@gmail.com> wrote: > > > I actually need these files as well. > > > > Cody > > > > On Mon, Jun 27, 2016 at 3:33 PM, Ting-Yu Chang <taiwan.chan...@gmail.com> > wrote: > > Hello all, > > > > Recently, the website of SumsDB is unavailable so that we can’t find > atlases we are looking for. We need data files to register individual scans > with the standard atlas. Could you help us to fix the problem of website? > or could you please send me the Macaque F99 atlas datasets for registration > with individual data? We would also like to request the reference for > landmarks. > > > > Thanks, > > > > Ting-Yu > > > > > > > > > > > > _______________________________________________ > > caret-users mailing list > > caret-users@brainvis.wustl.edu > > http://brainvis.wustl.edu/mailman/listinfo/caret-users > > > > > > _______________________________________________ > > caret-users mailing list > > caret-users@brainvis.wustl.edu > > http://brainvis.wustl.edu/mailman/listinfo/caret-users > > > _______________________________________________ > caret-users mailing list > caret-users@brainvis.wustl.edu > http://brainvis.wustl.edu/mailman/listinfo/caret-users > -- -- Ting-Yu Chang University of Wisconsin-Madison Physiology Graduate Training Program 1-608-335-1628 tchan...@wisc.edu 張廷宇 +886-919-058-196 taiwan.chan...@gmail.com
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