Re: [caret-users] caret-users Digest, Vol 108, Issue 3

2012-09-16 Thread Andrew Bock
script.log here: http://pulvinar.wustl.edu/cgi-bin/upload.cgi Donna On Sep 14, 2012, at 6:37 PM, Andrew Bock ab...@u.washington.edu wrote: Thanks for the advice Tim, but I did paste these commands exactly as I have them in my script (i.e. I don't use quotes). The quotes are only present

Re: [caret-users] caret-users Digest, Vol 108, Issue 1

2012-09-14 Thread Andrew Bock
edit your Subject line so it is more specific than Re: Contents of caret-users digest... Today's Topics: 1. caret_command -surface-apply-transformation-matrix (Andrew Bock) 2. Re: caret_command -surface-apply-transformation-matrix (Timothy Coalson

[caret-users] caret_command -surface-apply-transformation-matrix

2012-09-13 Thread Andrew Bock
Hello, I am attempting to follow the myelin maps pipeline outlined here: http://brainvis.wustl.edu/wiki/index.php/Caret:MyelinMaps From my subjects directory I run the following commands: mri_convert -rl mri/rawavg.mgz mri/ribbon.mgz ribbon.nii.gz caret_command -file-convert -sc -is FSS