Hi,
In my previous mail, I attached six pieces of screenshots. But their
file sizes are too big and received a message from
caret-users-bounces.
Then, I uploaded the original T1w (OrigT1w.nii.gz), the original T2w
(OrigT2w.nii.gz), and the converted T2w data (T2w.nii.gz) to the web
site that
The volumes look okay in AFNI, which doesn't warn about it being oblique. They
look like the captures.
They are in what AFNI calls AIL orientation. Here is the nifti_tool header
output:
it:/upload nifti_tool -disp_hdr -infiles OrigT1w.nii.gz
header file 'OrigT1w.nii.gz', num_fields = 43
Maybe try running fslreorient2std before FreeSurfer.
Peace,
Matt.
On 11/15/12 8:55 AM, Donna Dierker do...@brainvis.wustl.edu wrote:
The volumes look okay in AFNI, which doesn't warn about it being oblique.
They look like the captures.
They are in what AFNI calls AIL orientation. Here is
Hi Yuichiro,
I think the most efficient thing is for you to upload your T1 T2 NIFTI
volumes here:
http://pulvinar.wustl.edu/cgi-bin/upload.cgi
Just the original T1/T2. We can look at the header and see if Matt's hunch was
right.
Donna
On Nov 14, 2012, at 3:45 AM, Yuichiro Shimizu
I wonder if your sform has obliques in it. I agree that a screenshot
would be helpful, together with verifying that the surfaces and T1w and
T2w volumes are well aligned in some other screenshots.
Peace,
Matt.
On 11/12/12 8:42 AM, Donna Dierker do...@brainvis.wustl.edu wrote:
Okay, if you're
Hello
According to the web page Caret operation:MyelinMapping, I've obtained the
final results: L.MyelinMapping.metric, R.MyelinMapping.metric,
T1wdividedbyT2w.nii.gz, and T1wdividedbyT2w_ribbon.nii.gz.
The detail condition is described below.
-information about my analysis procedure
individual
Matt might get to this, but here are some clues based on how I'd proceed in
your shoes:
Find a figure in one of our papers like the one I want to make, e.g.:
http://sumsdb.wustl.edu/sums/archivelist.do?archive_id=8288739archive_name=Fig4_fsaverage_Conte-69.164k_fs_LR.spec
(I couldn't find the
