Re: [caret-users] Hi res recon

2014-10-18 Thread Dr. Aditya Tri Hernowo, Ph.D
Dear Donna, Colin, and David, Thank you all for the input. Turning off automatic error correction helped in significantly cutting off processing time. I managed to reconstruct with additional manual labour. It worked reasonably well. The topological errors were not that many, especially when

Re: [caret-users] Hi res recon

2014-10-14 Thread Donna Dierker
Hi Aditya, On monkeys, yes. Humans, no. The SureFit algorithm that is in Caret's segmentation feature was designed for cubic 1mm human data. It worked reasonably well on higher res monkey data, but some of the subroutines will likely break on higher res human data (e.g., disconnecting eye,

Re: [caret-users] Hi res recon

2014-10-14 Thread David Van Essen
Alternatively, you may find that FreeSurfer will work better for your current needs. Matt Glasser and others have gotten it to work reasonably well on macaque structural images. David On Oct 15, 2014, at 2:38 AM, Donna Dierker do...@brainvis.wustl.edu wrote: Hi Aditya, On monkeys, yes.