Hi Donna,
To get a feeling for the registration process in Caret, I start with
performing a spherical registration of a human surface
to the PALS-atlas. I have extracted the surface and generated a border
projection file containing the required cuts and
landmarks. However, when I want to perform t
Try this one:
http://brainmap.wustl.edu/pub/donna/ATLASES/HUMAN/PALS_B12/Human_PALS_B12.LR.MEN_WOMEN.AVG-LANDMARKS_Core6.SPHERE.borderproj
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As I recall, though it's been a long time, the GUI Caret took either border or
borderproj, but the command line caret_command wan
Hi Donna,
Thanks for the link.
Yes, I can imagine that it requires quit some effort (and experience)
to register a macaque surface using so many landmarks. I would
like to parcellate my macaque cortex using a (high-resolution)
atlas.
So what about if I do the following: I convert the freesurfer
I doubt you'll be able to convert the deformation map to Caret, but it won't be
necessary, if Spherical Demons can resample what you need onto the source or
target mesh, after it computes the registration.
If it's not too hard, give it a shot and let us know how it goes.
On Nov 4, 2014, at 12:
I will try to perform the registration in Caret (since I use Windows, I
cannot access the required compiler
to run Spherical Demons in Matlab). I found the needed files for
registering a macaque cortex and will
draw the landmarks by hand. Probably I will have to call for your help
again during the
