Re: [caret-users] question FreeSurfer to Caret and back

). question: is this possible? thanks! -joost ___ caret-users mailing list caret-users@brainvis.wustl.edu http://brainvis.wustl.edu/mailman/listinfo/caret-users -- With Best Regards Rouhollah Abdollahi

Re: [caret-users] .annot or .label conversion to caret

--regmethod surface --srcsurfreg sphere --trgsurfreg sphere.reg --hemi rh Then you need to apply the deformation map to get the new paint file on fsaverage caret space. Best Rouhi On Fri, Mar 16, 2012 at 10:10 PM, Rouhollah Abdollahi roohy...@gmail.comwrote: Hi , Donna I had done that for our

Re: [caret-users] GLIBCXX_3.4.9' not found

-users@brainvis.wustl.edu http://brainvis.wustl.edu/mailman/listinfo/caret-users -- With Best Regards Rouhollah Abdollahi ___ caret-users mailing list caret-users@brainvis.wustl.edu http://brainvis.wustl.edu/mailman/listinfo/caret-users

Re: [caret-users] orientation

@brainvis.wustl.edu http://brainvis.wustl.edu/mailman/listinfo/caret-users ___ caret-users mailing list caret-users@brainvis.wustl.edu http://brainvis.wustl.edu/mailman/listinfo/caret-users -- Best Regards Rouhollah Abdollahi

Re: [caret-users] ribbon generation

You dont need to create a conform volume. You can select the x y z size for volume in mris_fill. Also you can apply or use mris_vol2vol to regenerate the volume according the header that you want. Hope it helps Rouhi On Oct 23, 2013 11:03 PM, Colin Reveley cm...@sussex.ac.uk wrote: I think

Re: [caret-users] Different Node Numbers

Hi Actually the code import the original data from freesurfer to caret then automatically you will have different node number for different subjects and hemispheres. To have the same mesh you can use Freesurfer_to_fs_LR Pipeline which is available in the caret website. It imports all the data to

Re: [caret-users] mapping fMRI maps generated in freesurfer on

-users -- Best Regards Rouhollah Abdollahi ___ caret-users mailing list caret-users@brainvis.wustl.edu http://brainvis.wustl.edu/mailman/listinfo/caret-users

Re: [caret-users] mapping fMRI maps generated in freesurfer on

://brainvis.wustl.edu/mailman/listinfo/caret-users ___ caret-users mailing list caret-users@brainvis.wustl.edu http://brainvis.wustl.edu/mailman/listinfo/caret-users -- Best Regards Rouhollah Abdollahi

Re: [caret-users] mapping fMRI maps generated in freesurfer - accessing interatlas deformation maps

Rename the output extension to 'gii' or 'metric' in caret_command. You are finished by step 4. Then you can load the Pals spec and load your metric file as a data not volume. Rouhi On Nov 8, 2013 10:05 PM, SHAHIN NASR sha...@nmr.mgh.harvard.edu wrote: It worked! 1) First I used mri_convert

Re: [caret-users] AAL 3D rendering

Dear Joao, The simple way is to do the segmentation with the Colin27 brain that will create all the surfaces in Freesurfer. The following link is the Colin27 brain: http://packages.bic.mni.mcgill.ca/mni-models/colin27/mni_colin27_1998_nifti.zip and if you know freesurfer do the recon-all then

Re: [caret-users] How to transform freesurfer frmi maps to caret version?

may suggest a solution. My solution would be to regenerate everything on fsaverage then transform them to caret Conte69 space. Best Rouhi Best Regards Rouhollah Abdollahi *Institut für Neurowissenschaften und Medizin (INM-3)* Forschungszentrum Jülich Leo-Brandt-Straße 52425 Jülich, GermanyTel:

Re: [caret-users] read border file into Matlab

I meant this library: http://www.artefact.tk/software/matlab/gifti/ Rouhi Best Regards Rouhollah Abdollahi *Institut für Neurowissenschaften und Medizin (INM-3)* Forschungszentrum Jülich Leo-Brandt-Straße 52425 Jülich, GermanyTel: +49 2461 61-9324 On Mon, Nov 14, 2016 at 2:57 PM, Rouhollah

Re: [caret-users] read border file into Matlab

Then you may check this link to find out the file structure: http://brainvis.wustl.edu/CaretHelpAccount/caret5_help/file_formats/file_formats.html Best Regards Rouhi Best Regards Rouhollah Abdollahi *Institut für Neurowissenschaften und Medizin (INM-3)* Forschungszentrum Jülich Leo-Brandt