Hi Julia, No one has answered your question yet, because it doesn't have a simple answer. It depends on what you are trying to do, and it might make more sense to work in workbench, rather caret, depending on what you are doing.
If you have a label.gii, for example, you can view that in either workbench or caret. Workbench has this feature: http://brainvis.wustl.edu/pipermail/caret-users/2016-February/006367.html Then if you need something in caret, there is wb_command -border-file-export-to-caret5 to convert the border format to something caret can understand. But this monkey atlas stuff is in a state of perpetual flux/improvement, hence the need for several questions. David Van Essen is the best person to ask them, and if he is too busy to respond within a few days, ping the list again. Donna On Feb 12, 2016, at 4:29 PM, Julia Sliwa <jsl...@mail.rockefeller.edu> wrote: > Hi, > > As a follow up I found that displaying the PHT00 borders on the flat map is > available from the Tutorial files by changing the BorderColor. However the > borders and color patches appear mismatched and the borders have numerous > delineations, > > <image.png> > > The Paxinos PHT00 borders from Macaque_Atlas_c11 look much nicer. > > <image.png> > > Would there be a way of displaying those on a flat map? > > Many thanks! > Julia > > > > --------------------------------------------- > Julia Sliwa, Ph.D. > > Laboratory of Neural Systems > The Rockefeller University > 1230 York Ave, New York, NY 10065 > > > On Fri, Feb 12, 2016 at 2:54 PM, Julia Sliwa <jsl...@rockefeller.edu> wrote: > Hi Caret-users, > > > I am using Caret to display fMRI activations on flat maps registered to the > F99 atlas. I make use a lot of the Lewis and Van essen flat maps with > borders, and would like now to display the flat maps with the Paxinos-PHT00 > borders. Does anyone know how to display the borders of this atlas on flat > maps? > > I can paint my fMRI activations along with PaxinosPHT00 borders on very > inflated brain using those files, but not flat brain: > http://sumsdb.wustl.edu/sums/directory.do?id=8286148&dir_name=MACAQUE_ATLAS_CC11 > > I can also display my fMRI activation and cover them with the Paxinos-PHT00 > areas as color patches using the following tutorial, but cannot display the > corresponding Paxinos borders: > http://sumsdb.wustl.edu/sums/archivelist.do?archive_id=6595030&archive_name=CARET_TUTORIAL_SEPT06.zip > > Is there an easy way from here to display my activations on F99 flat with > Paxinos borders? > > Thanks for your help > Best > Julia > > > > > > > _______________________________________________ > caret-users mailing list > caret-users@brainvis.wustl.edu > http://brainvis.wustl.edu/mailman/listinfo/caret-users _______________________________________________ caret-users mailing list caret-users@brainvis.wustl.edu http://brainvis.wustl.edu/mailman/listinfo/caret-users
