If you did a binary install, did you remember to run the post-install
script: install.sh?
Does the $CEXAM/unix/runnable/run-all test work?
Meyer, Peter wrote:
Hi Li,
setpaths.sh (and variants for other shells) are generated during the cctbx build process (with ccp4-6.0.2, this might happen
Hello,
I am fairly new to this lark so please forgive me if this question is unclear,
but it is really puzzling me.
I have used phaser to generate a molecular replacement structure of my target
(which has 100% identity to my template) and this particular crystal I had
soaked with a ligand.
I
Covalent modification?? Bias in 2fo-fc map?
Can you show us a pic of offending density?
Dave
On 28/12/2007, Brenda Patterson [EMAIL PROTECTED] wrote:
Hello,
I am fairly new to this lark so please forgive me if this question is
unclear,
but it is really puzzling me.
I have used phaser to
What's the resolution? At low res it is possible to miss a subtle movement
of e.g. some sidechains which are being replaced by the ligand. What quality
parameters did the MR have? Can you omit the entire ligand binding site,
refine, and re-generate the map - what does it look like after that?
A
A postdoctoral fellow position is immediately available at the Structural
Immunobiology Unit, NIAID/NIH for a highly motivated individual to determine
the structures of macromolecular complexes involved in innate immune responses.
Our research program aims to elucidate how the pattern
There is another possibility that your ligand is not fully occupied,
if the binding site of protein endures an apparent change when bound
by ligand. Lijun
On Dec 28, 2007, at 7:55 AM, Brenda Patterson wrote:
Hello,
I am fairly new to this lark so please forgive me if this question
is
On Fri, 28 Dec 2007 15:55:39 +
Brenda Patterson [EMAIL PROTECTED] wrote:
Hello,
I am fairly new to this lark
No problem. With a name like Patterson, your future is guaranteed (unless of
course you see everything in the world with intensity but no phase).
I have a
I am refining a structure in which I had to model a small molecule
(done with Dundee PRODRG2 server). After fitting the small molecule
into the structure I merged the pdb's and used the merged pdb file
for generate (cns_solve). (Just in case: I did put the top and par
file for the small
Hi Mareike,
Did you also use Coot to fit the small molecule into the structure? If so,
there might be some
glitch at the stage of writing out the remodeled ligand... Do the coordinates
for the small
molecule look different within the input and output pdb files for the ligand
when you look at
Hi ,
Sorry for the offtopic first.
Could you provide any materials on line in terms of detergent parameters
changing vs. temperature. I am very interested in how CMC, aggregation
number,etc change from room temp. to 4 C.
Thanks a lot and happy new year all!
Deliang
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