Re: [ccp4bb] problem about coot on MacOSX

I think this version of coot tries to set the DISPLAY variable and that will sabotage launching it in 10.5.2. May I suggest trying this: http://xanana.ucsc.edu/~wgscott/xtal/wiki/index.php/Coot-0.5-pre-1-968_for_Intel_10.5_only On Tue, April 22, 2008 7:53 pm, zhangtao wrote: > Dear All: I

[ccp4bb] problem about coot on MacOSX

Dear All: I have a MacOSX (Core Duo model). I need to use Coot on it, I have installed the coot,and installation seems successful. But I can not run it. It give me information following: Gdk-WARNING **: locale not supported by Xlib, locale set to C Gdk-WARNING **: can not set locale modifie

[ccp4bb] Scala summary and log file- sometimes shortened

For some reason scala does not output the same log file for me everytime. I got used to looking at the summary for my scala run, using the Show summary button in ccp4i after picking view log file. In most cases I get a detailed summary. For this particular dataset , despite not changing any paramet

[ccp4bb] Postdoc Position in Protein Crystallography

POSTDOCTORAL POSITION IN PROTEIN CRYSTALLOGRAPHY AT BAYLOR COLLEGE OF MEDICINE An NIH-funded POSTDOCTORAL position is available immediately to investigate the structure and function of molecular chaperones and components of the protein quality control system. Diffracting crystals are available f

Re: [ccp4bb] 'stretched' electron density maps

Is this possibly due to anisotropy in the data? ie. data missing in one direction? You can look at the graphs from Truncate to see if this is the case. -Todd -Original Message- From: CCP4 bulletin board on behalf of Khan Amir Rafiq Sent: Tue 4/22/2008 7:43 AM To: CCP4BB@JISCMAIL.AC.UK S

Re: [ccp4bb] 'stretched' electron density maps

Such things almost always are due to some error - check first cell in reflection file and the PDB header. Next is the data very anisotropic? is there one or more rogue reflections? Eleanor Khan Amir Rafiq wrote: Hi, I have solved a structure by MR, unambiguously, and partially refined a 2.8A

Re: [ccp4bb] Postdoctoral positions

Hi, Last Friday I sent to the ccp4bb@jiscmail.ac.uk the following email for publication on the ccp4bb. I haven't seen the email yet on the ccp4bb. I certainly understand that there maybe delays between sending email to you and appearing on the ccp4bb. My concern is that I want to be sure that

[ccp4bb] dewars in USA airports

Hi all, sorry for off-topic: Is it possible to bring back an empty dewar as checked luggage from US airports? I'm considering in particular Boston Logan, but don't want to mess with TSA. Apparently it is possible with Ryanair in europe, with advance notification to airport. Thanks! Amir

[ccp4bb] 'stretched' electron density maps

Hi, I have solved a structure by MR, unambiguously, and partially refined a 2.8A structure, C2 space group, R/Rf currently 0.28/0.34 Data is not great quality (Rmerg 8%), but relatively complete throughout. However, electron density maps seem 'stretched' in one direction. Data were collected in-h

Re: [ccp4bb] hydrodynamic radius from atomic coordinates

> Dear colleagues, > > Does anyone know of a program to calculate hydrodynamic radius of a > protein > from atomic coordinates? > > Thanks. > > Mike Colaneri > Hi, you can use hydropro http://leonardo.fcu.um.es/macromol/programs/hydropro/hydropro.htm. mario

[ccp4bb] data recovery

I have a DAT full of diffraction images written on a tape drive of a DEC Alpha workstation and I cannot read the tape because the original setup no longer exists. For some reason the tape is not mountable on a DAT drive attached to an old SGI workstation. Needless to say, I really need these data.