[ccp4bb] From the CNS1.2 trnaslation error

2008-07-11 Thread Debajyoti Dutta
Hallow, Thank you for your kind attention. I am using CNS 1.2 to solve my structure with molecular replacement. As a novice CNS user, I was trying to follow the tutorial given at the CNS website. I have a tetramer. I have two queries. 1. There are two maps prepared from the

Re: [ccp4bb] Anion binding sites in proteins

2008-07-11 Thread Karsten Niefind
Dear Albert, please have a look at dx.doi.org/10.1007/s11010-008-9826-1 Good luck! Karsten --- Dr. Karsten Niefind Institute of Biochemistry Department of Chemistry University of Cologne Zuelpicher Strasse 47 D-50674 Cologne tel.: +49/221/470-6444 fax:

[ccp4bb] PhD Student Position in Structural Biology

2008-07-11 Thread Dessi Georgieva
PhD student position in structural biology A PhD student position in structural biology is open and presently available at the University of Hamburg, Institute of Biochemistry and Molecular Biology. The research project in which the candidate will be integrated is in collaboration with a

[ccp4bb] REMINDER: Ninth International School on the Crystallography of Biological Macromolecules

2008-07-11 Thread Derek Logan
*** ONLY TWO WEEKS TO GO! *** There are only two weeks left to register for the Ninth International School on the Crystallography of Biological Macromolecules Como (Italy), 29th September – 3rd October 2008. The School is one of the premier forums i Europe for dissemination of developments

Re: [ccp4bb] pdbset bug - seqres record

2008-07-11 Thread Ed Pozharski
Pete, I don't think so. The pdbset output does not match the SEQRES definition in PDB format version 2.3 and I didn't find any changes in the upstream versions. Plus, the pdbset output does not match the SEQRES record in the pdb-file downloaded from PDB, and it's unlikely that format was

Re: [ccp4bb] pdbset bug - seqres record

2008-07-11 Thread Martyn Winn
It seems to me that posting in ccp4bb is one of the correct ways to report a problem. Am I wrong? The other option is to send it to [EMAIL PROTECTED], but I assume that this address is subscribed to ccp4bb anyway. Ed. Herewith the official line: The correct way of reporting problems is

[ccp4bb] PhD fellowship in structural biology at Department of Medicinal Chemistry, University of Copenhagen

2008-07-11 Thread Michael Gajhede
For more information please follow link and look at the project number 11: http://www.farma.ku.dk/index.php?id=5587 information on research group: www.farma.ku.dk/br Professor Michael Gajhede Biostructural research Department of Medicinal Chemistry University of Copenhagen

Re: [ccp4bb] From the CNS1.2 trnaslation error

2008-07-11 Thread Debajyoti Dutta
Hi again, Thank you for your replies. I am jast running CNS translation function to learn it. Phaser has successfully solved that but I also want to learn how CNS do the MR. My protein is a tetramer. I will be highly benifitted if kindly one help me instructing how to fit the multimers while

[ccp4bb] Version 1.21 of the Crystallography and NMR System (CNS)

2008-07-11 Thread Axel Brunger
CNS 1.21 is now available. A particular highlight is automatic dimensioning of torsion angle dynamics arrays (e.g., MAXTREE), so no user intervention is needed anymore. There are many bug fixes in source code, modules, and input files. I would like to thank Joe Krahn, Ben Eisenbraun, and

[ccp4bb] progrant to calculate error in derived parameters

2008-07-11 Thread Michael Colaneri
Dear colleagues, Is there a program to calculate error in bond ables or other angles between coordinates from Luzzati error? Thanks. Mike

Re: [ccp4bb] ArpWarp error

2008-07-11 Thread Serge Cohen
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Hello Mark; Could you give us a bit more information, in particular what is the last step that runs before this one? Could you send me (or post here) the last 10/20 lines of summary logfile (the one where the lines you reported are) ?

[ccp4bb] Postdoctoral position at The Scripps Research Institute

2008-07-11 Thread Takanori Otomo
A postdoctoral position focusing on structural and functional basis of autophagy is available immediately in the laboratory of Takanori Otomo in the Department of Molecular Biology at The Scripps Research Institute (California). This is a new laboratory and the research field is young. Thus your

[ccp4bb] Is there an easy way to down-weight figures of merit?

2008-07-11 Thread William Scott
Hi Citizens: I realize this is one of those warranty-violating questions, but is there a simple way to down-weight figures of merit, or the equivalent in terms of Hendrickson-Lattman coefficients? I'm trying to generalize and automate a procedure for solving RNA structures without